[Bio-Linux] r-cran-ape

[Carlos Morais]

Ok, thanks again.

On Thu, Oct 1, 2015 at 12:47 PM, Tim Booth <tbooth at ceh.ac.uk> wrote:

> Hi Carlos,
>
> See for yourself.  You can unpack the upgrade script to view it, but
> I've also attached an unpacked copy to this mail for you.  If you read
> from line 154 you can see exactly what is being added.  You'll see why I
> don't advise people to do this manually as there are many steps.
>
> Cheers,
>
> TIM
>
> On Thu, 2015-10-01 at 12:37 -0300, Carlos Morais wrote:
> > Hi Tim,
> >
> >
> >     I've added manually the Biolinux ppa. Adding also C2D4U ppa fixes.
> > Thanks a lot.
> >
> >     Does the mentioned upgrade script add any other useful repository?
> >
> >
> > Regards,
> >
> >     Carlos
> >
> >
> > On Thu, Oct 1, 2015 at 7:12 AM, Tim Booth <tbooth at ceh.ac.uk> wrote:
> >         Hi Carlos,
> >
> >         You should have the package available.  On Bio-Linux 8
> >         (Trusty) a bunch
> >         of R packages are provided by the C2D4U PPA repository.  So on
> >         my system
> >         I can check it like this:
> >
> >         tbooth at balisaur[tbooth] apt-cache policy r-cran-ape
> >         r-cran-ape:
> >           Installed: 3.3-1cran1ppa0
> >           Candidate: 3.3-1cran1ppa0
> >           Version table:
> >          *** 3.3-1cran1ppa0 0
> >                 500 http://ppa.launchpad.net/marutter/c2d4u/ubuntu/
> >         trusty/main amd64 Packages
> >                 100 /var/lib/dpkg/status
> >
> >         If you installed Bio-Linux 8 directly or ran the upgrade8.sh
> >         script then
> >         this should have been set up for you, so either something has
> >         gone wrong
> >         or you have set up your software sources manually.
> >
> >         I'd suggest you either re-run the upgrade script to add the
> >         repository
> >         configuration or else see
> >         https://launchpad.net/~marutter/+archive/ubuntu/c2d4u and
> >         follow the
> >         instructions for manually adding the repository.  Note that
> >         you will
> >         also need to set up R core updates in order for these packages
> >         to work
> >         properly.
> >
> >         Cheers,
> >
> >         TIM
> >
> >         On Wed, 2015-09-30 at 17:31 -0300, Carlos Morais wrote:
> >         > Hi,
> >         >
> >         >
> >         >    Any reason why package r-cran-ape is not present in
> >         trusty? It is
> >         > on precise.
> >         >
> >         >
> >         > Regards,
> >         >
> >         >     Carlos
> >         >
> >
> >         > _______________________________________________
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> >         > Bio-Linux at nebclists.nerc.ac.uk
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> >
> >         --
> >         Tim Booth <tbooth at ceh.ac.uk>
> >
> >         Centre for Ecology and Hydrology
> >         Maclean Bldg, Benson Lane
> >         Crowmarsh Gifford
> >         Wallingford, England
> >         OX10 8BB
> >
> >         http://environmentalomics.org/bio-linux
> >         +44 1491 69 2297
> >
> >
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> >
> >
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>
> --
> Tim Booth <tbooth at ceh.ac.uk>
>
> Centre for Ecology and Hydrology
> Maclean Bldg, Benson Lane
> Crowmarsh Gifford
> Wallingford, England
> OX10 8BB
>
> http://environmentalomics.org/bio-linux
> +44 1491 69 2297
>
>
>
>
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