[Bio-Linux] r-cran-ape

[Tim Booth]

Hi Carlos,

See for yourself.  You can unpack the upgrade script to view it, but
I've also attached an unpacked copy to this mail for you.  If you read
from line 154 you can see exactly what is being added.  You'll see why I
don't advise people to do this manually as there are many steps.

Cheers,

TIM

On Thu, 2015-10-01 at 12:37 -0300, Carlos Morais wrote:
> Hi Tim,
> 
> 
>     I've added manually the Biolinux ppa. Adding also C2D4U ppa fixes.
> Thanks a lot.
> 
>     Does the mentioned upgrade script add any other useful repository?
> 
> 
> Regards,
> 
>     Carlos
> 
> 
> On Thu, Oct 1, 2015 at 7:12 AM, Tim Booth <tbooth at ceh.ac.uk> wrote:
>         Hi Carlos,
>         
>         You should have the package available.  On Bio-Linux 8
>         (Trusty) a bunch
>         of R packages are provided by the C2D4U PPA repository.  So on
>         my system
>         I can check it like this:
>         
>         tbooth at balisaur[tbooth] apt-cache policy r-cran-ape
>         r-cran-ape:
>           Installed: 3.3-1cran1ppa0
>           Candidate: 3.3-1cran1ppa0
>           Version table:
>          *** 3.3-1cran1ppa0 0
>                 500 http://ppa.launchpad.net/marutter/c2d4u/ubuntu/
>         trusty/main amd64 Packages
>                 100 /var/lib/dpkg/status
>         
>         If you installed Bio-Linux 8 directly or ran the upgrade8.sh
>         script then
>         this should have been set up for you, so either something has
>         gone wrong
>         or you have set up your software sources manually.
>         
>         I'd suggest you either re-run the upgrade script to add the
>         repository
>         configuration or else see
>         https://launchpad.net/~marutter/+archive/ubuntu/c2d4u and
>         follow the
>         instructions for manually adding the repository.  Note that
>         you will
>         also need to set up R core updates in order for these packages
>         to work
>         properly.
>         
>         Cheers,
>         
>         TIM
>         
>         On Wed, 2015-09-30 at 17:31 -0300, Carlos Morais wrote:
>         > Hi,
>         >
>         >
>         >    Any reason why package r-cran-ape is not present in
>         trusty? It is
>         > on precise.
>         >
>         >
>         > Regards,
>         >
>         >     Carlos
>         >
>         
>         > _______________________________________________
>         > Bio-Linux mailing list
>         > Bio-Linux at nebclists.nerc.ac.uk
>         > http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
>         
>         --
>         Tim Booth <tbooth at ceh.ac.uk>
>         
>         Centre for Ecology and Hydrology
>         Maclean Bldg, Benson Lane
>         Crowmarsh Gifford
>         Wallingford, England
>         OX10 8BB
>         
>         http://environmentalomics.org/bio-linux
>         +44 1491 69 2297
>         
>         
>         _______________________________________________
>         Bio-Linux mailing list
>         Bio-Linux at nebclists.nerc.ac.uk
>         http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
> 
> 
> _______________________________________________
> Bio-Linux mailing list
> Bio-Linux at nebclists.nerc.ac.uk
> http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux

-- 
Tim Booth <tbooth at ceh.ac.uk>

Centre for Ecology and Hydrology
Maclean Bldg, Benson Lane
Crowmarsh Gifford
Wallingford, England
OX10 8BB 

http://environmentalomics.org/bio-linux
+44 1491 69 2297



-------------- next part --------------
An embedded and charset-unspecified text was scrubbed...
Name: attachment_deleted_upgrade_to_8_sh.txt
URL: <http://www.bioinformatics.org/pipermail/bio-linux-list/attachments/20151001/01d08ef1/attachment.txt>