[Bio-Linux] r-cran-ape

[Carlos Morais]

Hi Tim,

    I've added manually the Biolinux ppa. Adding also C2D4U ppa fixes.
Thanks a lot.
    Does the mentioned upgrade script add any other useful repository?

Regards,
    Carlos

On Thu, Oct 1, 2015 at 7:12 AM, Tim Booth <tbooth at ceh.ac.uk> wrote:

> Hi Carlos,
>
> You should have the package available.  On Bio-Linux 8 (Trusty) a bunch
> of R packages are provided by the C2D4U PPA repository.  So on my system
> I can check it like this:
>
> tbooth at balisaur[tbooth] apt-cache policy r-cran-ape
> r-cran-ape:
>   Installed: 3.3-1cran1ppa0
>   Candidate: 3.3-1cran1ppa0
>   Version table:
>  *** 3.3-1cran1ppa0 0
>         500 http://ppa.launchpad.net/marutter/c2d4u/ubuntu/ trusty/main
> amd64 Packages
>         100 /var/lib/dpkg/status
>
> If you installed Bio-Linux 8 directly or ran the upgrade8.sh script then
> this should have been set up for you, so either something has gone wrong
> or you have set up your software sources manually.
>
> I'd suggest you either re-run the upgrade script to add the repository
> configuration or else see
> https://launchpad.net/~marutter/+archive/ubuntu/c2d4u and follow the
> instructions for manually adding the repository.  Note that you will
> also need to set up R core updates in order for these packages to work
> properly.
>
> Cheers,
>
> TIM
>
> On Wed, 2015-09-30 at 17:31 -0300, Carlos Morais wrote:
> > Hi,
> >
> >
> >    Any reason why package r-cran-ape is not present in trusty? It is
> > on precise.
> >
> >
> > Regards,
> >
> >     Carlos
> >
> > _______________________________________________
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> > Bio-Linux at nebclists.nerc.ac.uk
> > http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
>
> --
> Tim Booth <tbooth at ceh.ac.uk>
>
> Centre for Ecology and Hydrology
> Maclean Bldg, Benson Lane
> Crowmarsh Gifford
> Wallingford, England
> OX10 8BB
>
> http://environmentalomics.org/bio-linux
> +44 1491 69 2297
>
>
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