[Genquire-dev] Loading TIGR xml into genquire

[David Block]

Hi Matt,

Suddenly someone is back working on Genquire again!  Hurray! (It makes 
my CV look much better if the project is not dead.)

Okay, TIGR xml - is that the SAX parser I wrote once ages ago?  Or has 
someone thankfully updated it?  I had no idea what I was doing when I 
wrote that (come to think of it....), I just hacked at it until it 
worked with the XML I was getting at the time.

Does it have something to do with the direction of the sequence?

perl -d is your friend... but you know that.

You can send me code snippets if it will make you feel better.

Go Team Genquire :-)

Dave

On Nov 17, 2004, at 9:46 AM, Links M wrote:

> I am presently having a bugger of a time loading the latest
> Arabidopsis data from TIGR into Genquire. I have had to
> 'alter' Bio::SeqIO::tigr to skip over a series of
> attributes which are not handled yet (MODEL_ATTRIBUTE and
> another one which now escapes me).
>
> I cannot get the PSEUDOCHROMOSOME loading to work not the
> BACS from TIGR. When I try and load the BACS it seems as
> though everything is working ok and it gets to creating a
> tiling path prompts me for an organism and version id and
> then just sits there.
>
> On the off chance anyone is out there and has any idea
> please let me know if this rins any bells with you?
>
> <aside> If no one is out there and I'm really talking just
> to myself does that make me crazy?</aside>
>
> Matt
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