[Bio-Linux] QIIME 1.9 biom cmd issue

[Tim Booth]

Hi Andor,

Looks like I neglected to update the "pyqi" library when I updated
QIIME.  I've now pushed an updated package and the obvious error message
is gone.  Could you please see if that fixes it for you?

Cheers,

TIM

On Tue, 2015-04-21 at 19:47 +0100, Andor J Kiss wrote:
> Hi,
> 
>     Trying to run the command biom summarize-table and I'm getting an
> error:
> 
> biom
> [ 2:47PM]
> usage: biom <command> [<args>]
> 
> The currently available commands are:
>    add-metadata        Add metadata to a BIOM table
>    convert             Convert to/from the BIOM table format
>    normalize-table     Normalize a BIOM table
>    show-install-info   Provide information about the biom-format
> installation
>    subset-table        Subset a BIOM table
>    validate-table      Validate a BIOM-formatted file
> 
> The following commands could not be loaded:
>    summarize-table     Error: cannot import name
> write_or_print_list_of_strings
> 
> Any ideas on how to fix?
> 
> Thanks,
> 
> 
-- 
Tim Booth <tbooth at ceh.ac.uk>
NERC Environmental Bioinformatics Centre 

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