[Bio-Linux] QIIME 1.9 biom cmd issue

Andor J Kiss kissaj at miamioh.edu
Tue Apr 21 14:47:10 EDT 2015


Hi,

    Trying to run the command biom summarize-table and I'm getting an
error:

biom
[ 2:47PM]
usage: biom <command> [<args>]

The currently available commands are:
   add-metadata        Add metadata to a BIOM table
   convert             Convert to/from the BIOM table format
   normalize-table     Normalize a BIOM table
   show-install-info   Provide information about the biom-format
installation
   subset-table        Subset a BIOM table
   validate-table      Validate a BIOM-formatted file

The following commands could not be loaded:
   summarize-table     Error: cannot import name
write_or_print_list_of_strings

Any ideas on how to fix?

Thanks,
-- 
__________________________________________________________________
Andor J Kiss, Supervisor
Center for Bioinformatics and Functional Genomics
086 Pearson Hall ~ Miami University
700 East High Street
Oxford, Ohio  45056
USA

eMAIL: kissaj at MiamiOH.edu 
Telephone: +1 (513) 529-4280
Fax: +1 (513) 529-2431
URL (CBFG): http://www.cas.miamioh.edu/cbfg/  
URL (CBFG Services):
https://www.scienceexchange.com/labs/center-for-bioinformatics-functional-genomics
URL (Research): http://openwetware.org/wiki/User:Andor_J_Kiss 


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