[Bio-Linux] How to Install all packages on Ubuntu?

[Jasmine Lognnes]

Dear Tim,

That's a very impressive script. Wow!

By going through the script I have cherry picked what looks like to be
needed on a plain Ubuntu 12.04 64bit. I have attached it as a script. Can
you verify that it is the correct procedure?

On the liveUSB I did

grep "^Packages: bio-linux" /var/lib/dpkg/status | awk '{print $2}'

and got the attached list of packages. On a successful installation, should
I end up these exact packages?

Hugs,
Jasmine =)





On 11 February 2014 19:54, Tim Booth <tbooth at ceh.ac.uk> wrote:

> Hi Jasmine,
>
> Installing all the bio-linux-* packages listed in the package manager is
> a bad idea, but you can install all the ones that come on the standard
> Bio-Linux installation by using the same script I made for Bio-Linux
> 6->7 upgrades.
>
> Please see this page:
>
> http://nebc.nerc.ac.uk/tools/bio-linux/other-bl-docs/upgrade6-to-7
>
> Cheers,
>
> TIM
>
> On Tue, 2014-02-11 at 13:29 +0000, Jasmine Lognnes wrote:
> > Hello all =)
> >
> >
> > The USB stick fails to boot on my netbook after the boot loader,
> > because it can't recognize the keyboard. So I tried to install ALL the
> > bio-linux packages on a Ubuntu 12.04 64bit, and ran into tons of
> > dependency issues.
> >
> >
> > Have anyone succeed in installing all the packages, and if so, how? =)
> >
> >
> > Hugs,
> > Jasmine
> >
> >
> >
> >
>
> --
> Tim Booth <tbooth at ceh.ac.uk>
> NERC Environmental Bioinformatics Centre
>
> Centre for Ecology and Hydrology
> Maclean Bldg, Benson Lane
> Crowmarsh Gifford
> Wallingford, England
> OX10 8BB
>
> http://nebc.nerc.ac.uk
> +44 1491 69 2705
>
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