[Bio-Linux] biolinux 8, Tophat incompatible with Bowtie2

[Josh Thackray]

Hi,

I am running biolinux 8 and am trying to use Tophat (version 2.0.9) but 
this is incompatible with the version of bowtie2 (2.2.3) installed on 
the system by default. It looks like this issue was resolved in tophat 
version 2.0.12. It looks like the issue has to do with a change in the 
structure of the bowtie2 package where the aligner changed names from 
"bowtie2-align" to just "bowtie2". How can I update my tophat to this 
version?

Thanks,

Josh

-- 
Josh Thackray
Laboratory Researcher III
Human Genetics Institute of NJ
Department of Genetics
Rutgers University