[Bio-linux-list] problem with the pakages

[Tony Travis]

On 30/03/16 12:22, Pau Marc Muñoz Torres wrote:
> Hi people
>
>  I am having some problems with the packages, each time I do an apt-get
> update I am having the following errors
>
> W: Duplicate sources.list entry
> http://ppa.launchpad.net/nebc/bio-linux/ubuntu/ trusty/main amd64
> Packages
> (/var/lib/apt/lists/ppa.launchpad.net_nebc_bio-linux_ubuntu_dists_trusty_main_binary-amd64_Packages)
> W: Duplicate sources.list entry
> http://ppa.launchpad.net/nebc/bio-linux/ubuntu/ trusty/main i386
> Packages
> (/var/lib/apt/lists/ppa.launchpad.net_nebc_bio-linux_ubuntu_dists_trusty_main_binary-i386_Packages)
>
> what can i do?

Hi, Pau.

You need to check your sources.list files - This is what it should be:

> grep bio-linux /etc/apt/sources.list.d/*.list
> /etc/apt/sources.list.d/bio-linux-legacy.list:# deb http://distro.ibiblio.org/bio-linux/packages/ unstable bio-linux
> /etc/apt/sources.list.d/bio-linux-legacy.list:deb http://nebc.nerc.ac.uk/bio-linux/ unstable bio-linux
> /etc/apt/sources.list.d/nebc-bio-linux-trusty.list:deb http://ppa.launchpad.net/nebc/bio-linux/ubuntu trusty main
> /etc/apt/sources.list.d/nebc-bio-linux-trusty.list:deb-src http://ppa.launchpad.net/nebc/bio-linux/ubuntu trusty main

You might have some redundant *.list files if you've upgraded Bio-Linux
or have added other package source files e.g. the "cloudbio-linux.list".

HTH,

  Tony.

--
Dr. A.J.Travis, University of Aberdeen, Institute of Biological and
Environmental Sciences, Cruickshank Building, St. Machar Drive, Aberdeen
AB24 3UU, Scotland, UK. tel +44(0)1224 272700, fax +44 (0)1224 272 396
http://www.abdn.ac.uk, mailto:tony.travis at abdn.ac.uk, skype:ajtravis


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