[Bio-Linux] Trinity added, Mothur and Mira updated

[Bishwa Kiran]

Thanks for the update !

On Mon, Sep 14, 2015 at 6:42 AM, Tim Booth <tbooth at ceh.ac.uk> wrote:

> Hi All,
>
> I've been doing a round of package updates on Bio-Linux 8 over the last
> week.  We now have both Mothur and Mira updated to the latest versions:
>
> mira-assembler package is version 4.9.5
> mothur package is version 1.36.1
>
> Both will be updated by the package updater. If you experience any
> problems or regressions with these new packages please let me know.
>
> I'm also pleased to say that the Trinity RNA-Seq De novo assembler has
> been added to the package repository (http://trinityrnaseq.github.io/).
> Various modifications have been made to Trinity to make it integrate
> nicely with the other packages on the system, so if you have problems
> running it please let me know and I'll check if it is maybe something
> that got messed up in the packaging.
>
> trinityrnaseq package is version 2.0.6
>
> To get it: sudo apt-get install trinityrnaseq
> then just type: "Trinity" (with the capital T)
>
> The credit for all this goes mainly to Michael and Andreas from the
> Debian Med project who maintain these packages in Debian.  I've been
> able to take what they made and backport it to Bio-Linux for you.
>
> Cheers,
>
> TIM
>
> --
> Tim Booth <tbooth at ceh.ac.uk>
>
> Centre for Ecology and Hydrology
> Maclean Bldg, Benson Lane
> Crowmarsh Gifford
> Wallingford, England
> OX10 8BB
>
> http://environmentalomics.org/bio-linux
> +44 1491 69 2297
>
>
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>



-- 
- Bish
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