[Bio-Linux] Qiime 1.9 dependencies problem

[Tarcisio Fedrizzi]

Hi Tim,
the problem is fixed! Thank you.

Cheers,
Tarcisio.

On Thu, Apr 9, 2015 at 2:01 PM, Tim Booth <tbooth at ceh.ac.uk> wrote:

> Hi Tarcisio,
>
> Thanks for the bug report.  The package is on the C2D4U PPA which is
> activated by default on Bio-Linux machines which is why I didn't spot
> this problem before.
>
> I've copied the package over to the Bio-Linux PPA, so this problem
> should now be fixed, and you should be able to use QIIME without any
> further changes to your APT sources configuration.  Is it working for
> you now?
>
> Cheers,
>
> TIM
>
> On Thu, 2015-04-09 at 11:13 +0100, Tarcisio Fedrizzi wrote:
> > Hello,
> >
> > I write you because I have a problem with the dependencies of qiime.
> >
> > I'm using ubuntu server 14.04 lts and I've added the repos for
> > biolinux 8:
> >
> > deb http://nebc.nerc.ac.uk/bio-linux/ unstable bio-linux deb
> > http://ppa.launchpad.net/nebc/bio-linux/ubuntu trusty main
> > deb-src http://ppa.launchpad.net/nebc/bio-linux/ubuntu trusty main
> >
> >
> > The problem with qiime 1.9 is that the package r-cran-optparse is
> > included neither in ubuntu nor in biolinux. I report this especially
> > because the trusty release is an LTS and maybe there are other users
> > that want to keep this release of ubuntu.
> >
> >
> > Thank you very much.
> >
> > Best regards,
> >
> > Tarcisio Fedrizzi.
> >
>
> --
> Tim Booth <tbooth at ceh.ac.uk>
> NERC Environmental Bioinformatics Centre
>
> Centre for Ecology and Hydrology
> Maclean Bldg, Benson Lane
> Crowmarsh Gifford
> Wallingford, England
> OX10 8BB
>
> http://environmentalomics.org/bio-linux
> +44 1491 69 2297
>
>
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