[Bio-Linux] biolinux 8, Tophat incompatible with Bowtie2

[Tim Booth]

Hi Josh,

Sorry about that, I got so distracted trying to compile the tools
against the right version of the SeqAn that I didn't realise I was
missing essential binaries in the package.

New version up now - how's that looking?

Cheers,

TIM

On Wed, 2014-12-17 at 18:23 +0000, Josh Thackray wrote:
> Hi Tim,
> 
> Thanks for updating the packages! I updated using the package manager, 
> however bowtie (version 1.1.1) seems to now be broken. Upon further 
> investigation, it looks like only the debug binaries get installed. 
> Invoking bowtie with the --debug option gives me the help message, while 
> invoking bowtie with no options gives an error (No such file or directory).
> 
> Thanks,
> 
> Josh
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-- 
Tim Booth <tbooth at ceh.ac.uk>
NERC Environmental Bioinformatics Centre 

Centre for Ecology and Hydrology
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