[Bio-Linux] FW: [Bio-linux-announce] Bio-Linux 8 now available
Tauqeer Alam
tauqeer9 at gmail.com
Sun Aug 3 01:40:23 EDT 2014
Hi All
I am trying to reinstall Parallels Tools ('cd /media/Parallels\ Tools/'
followed by 'sudo ./install) but getting following error. I would really
appreciate if somebody help me resolve this problem. Eventually I want to
upgrade to Biolinux8.
Thanks
Tauqeer
On Sat, Aug 2, 2014 at 2:57 PM, Stephen P. Molnar <s.molnar at sbcglobal.net>
wrote:
> Please see the following messages.
>
>
>
> Thanks in advance.
>
>
>
> Stephen P. Molnar, Ph.D. Life is a
> fuzzy set
>
> Foundation for Chemistry Stochastic and
> multivariate
>
> www.FoundationForChemistry.com
>
> (614)312-7528 (c)
>
> Skype: smolnar1
>
>
>
>
>
> -----Original Message-----
>
> From: Tim Booth [mailto:tbooth at ceh.ac.uk <tbooth at ceh.ac.uk>]
>
> Sent: Friday, August 01, 2014 9:40 AM
>
> To: Stephen P. Molnar
>
> Subject: Re: [Bio-linux-announce] Bio-Linux 8 now available
>
>
>
> Hi Stephen,
>
>
>
> Glad you sorted out the shell.
>
>
>
> I'm sorry, but I can't say what might be up with the keyboard and I'm not
> going to start experimenting with XFCE right now as I have other
> priorities. You may well have more luck on the discussion mailing list:
>
> http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
>
>
>
> Cheers,
>
>
>
> TIM
>
>
>
> On Fri, 2014-08-01 at 11:59 +0100, Stephen P. Molnar wrote:
>
> > Thanks for the reply. As it turns out that was a red-faced forehead
>
> > slapping problem. After dispatching my note I realized that the shell
>
> > was zsh.
>
> >
>
> > Thanks to your reply I have successfully changed the default shell to
>
> > bash.
>
> >
>
> > There is, however anew problem, also a head scratcher for me. As I
>
> > don't like the Gnome shell and had become unenchanted with KDE, my
>
> > desktop of choice on my linux machines is XFCE, with Xfe as the file
>
> > manager of choice. I find that the keyboard doesn't seem to be
>
> > recognized by the xfwrite editor. On the other hand, nedit works as it
>
> > should.
>
> >
>
> > Your input about this problem would be much appreciated.
>
> >
>
> > Thanks in advance.
>
> >
>
> > Stephen P. Molnar, Ph.D. Life is a
> fuzzy set
>
> > Foundation for Chemistry Stochastic
> and multivariate
>
> > www.FoundationForChemistry.com
>
> > (614)312-7528 (c)
>
> > Skype: smolnar1
>
> >
>
> >
>
> > -----Original Message-----
>
> > From: Tim Booth [mailto:tbooth at ceh.ac.uk <tbooth at ceh.ac.uk>]
>
> > Sent: Friday, August 01, 2014 5:05 AM
>
> > To: Stephen P. Molnar
>
> > Subject: Re: [Bio-linux-announce] Bio-Linux 8 now available
>
> >
>
> > Hi Stephen,
>
> >
>
> > Nothing so mysterious here. The default shell on Bio-Linux is ZSH, so
> if you are a BASH fan you'll want to do:
>
> >
>
> > chsh -s /bin/bash
>
> > exec bash -l
>
> >
>
> > We do already have both L and ll aliased to that command, but not "l"
>
> > :-)
>
> >
>
> > Cheers,
>
> >
>
> > TIM
>
> >
>
> > On Thu, 2014-07-31 at 20:16 +0100, Stephen P. Molnar wrote:
>
> > > I have encountered a rather strange problem with the new BioLinux v
>
> > > 8 latest.
>
> > >
>
> > > I installed the distribution in a VMware Player without any problems
>
> > > or error messages. In fact, I have a Debian v-7.6.0 distribution
>
> > > running in the same VMware device. Consequently, I have confidence
>
> > > in the virtual computer and my laptop on which it is running.
>
> > >
>
> > > I edited .bashrc to include the line alias l='ls -l --color'
>
> > >
>
> > > When I source the edited .bashrc file I get the following:
>
> > >
>
> > > computation at inga[computation] source .bashrc
> [
>
> > > 2:57PM]
>
> > > .bashrc:16: command not found: shopt
>
> > > .bashrc:24: command not found: shopt
>
> > > .bashrc:108: command not found: shopt
>
> > > /usr/share/bash-completion/bash_completion:35: parse error near `]]'
>
> > > \[\e]0;\u@\h: \w\a\]${debian_chroot:+($debian_chroot)}\u@\h:\w\$
> [
>
> > > 2:57PM]
>
> > >
>
> > > The problem seems to be that shopt is missing!
>
> > >
>
> > > Please advise.
>
> > >
>
> > > Thanks in advance.
>
> > >
>
> > > Stephen P. Molnar, Ph.D. Life is a
> fuzzy
>
> > > set
>
> > > Foundation for Chemistry Stochastic
> and
>
> > > multivariate
>
> > > www.FoundationForChemistry.com
>
> > > (614)312-7528 (c)
>
> > > Skype: smolnar1
>
> > >
>
> > > -----Original Message-----
>
> > > From: Tim Booth [mailto:tbooth at ceh.ac.uk <tbooth at ceh.ac.uk>]
>
> > > Sent: Wednesday, July 30, 2014 11:55 AM
>
> > > To: bio-linux-announce at nebclists.nerc.ac.uk; Bio-Linux mailing list
>
> > > Subject: [Bio-linux-announce] Bio-Linux 8 now available
>
> > >
>
> > > Dear All,
>
> > >
>
> > > The Bio-Linux system gets a major new release every two years
>
> > > following the regular Ubuntu "LTS" releases. Since Ubuntu 14.04 LTS
>
> > > came out in April I've been working with help from the Bio-Linux
>
> > > community to make Bio-Linux 8 and it is now ready and available via
> the new website.
>
> > >
>
> > > http://environmentalomics.org/bio-linux/
>
> > >
>
> > > Upgrades from Bio-Linux 7 to 8 do not require re-installation. I
>
> > > encourage you all to upgrade soon, as new bioinformatics packages
>
> > > will no longer be provided for Bio-Linux 7. See the "Installation"
>
> > > section for instructions on upgrading your BL7 machine.
>
> > >
>
> > > The new Ubuntu 14.04 base system brings many benefits such as
>
> > > increased hardware compatibility and new office and multimedia
>
> > > software, but Bio-Linux itself also has many improvements and
> new/updated packages.
>
> > > Also for the first time there is a version in OVA format for
>
> > > VirtualBox/VMWare users, and this version will be updated whenever
>
> > > new ISO files are released. See the "What's New" and "Software List"
>
> > > pages on the website for details.
>
> > >
>
> > > As ever, please report problems and feedback to
>
> > > helpdesk at nebc.nerc.ac.uk. I can't promise to fix everything but
>
> > > will endeavour to provide help and squash bugs where I can. Also,
>
> > > please let me know if you use Bio-Linux for teaching or manage a
>
> > > large installation on your departmental server or computing lab.
>
> > > The more we can prove that people find this stuff useful, the more
> likely we are to get future funding!
>
> > >
>
> > > I hope you enjoy using Bio-Linux 8.
>
> > >
>
> > > TIM
>
> > >
>
> > > --
>
> > > Tim Booth <tbooth at ceh.ac.uk>
>
> > > NERC Environmental Bioinformatics Centre
>
> > >
>
> > > Centre for Ecology and Hydrology
>
> > > Maclean Bldg, Benson Lane
>
> > > Crowmarsh Gifford
>
> > > Wallingford, England
>
> > > OX10 8BB
>
> > >
>
> > > http://nebc.nerc.ac.uk
>
> > > +44 1491 69 2705
>
> > > _______________________________________________
>
> > > Bio-Linux-announce mailing list
>
> > > Bio-Linux-announce at nebclists.nerc.ac.uk
>
> > > http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux-announce
>
> > >
>
> >
>
> > --
>
> > Tim Booth <tbooth at ceh.ac.uk>
>
> > NERC Environmental Bioinformatics Centre
>
> >
>
> > Centre for Ecology and Hydrology
>
> > Maclean Bldg, Benson Lane
>
> > Crowmarsh Gifford
>
> > Wallingford, England
>
> > OX10 8BB
>
> >
>
> > http://nebc.nerc.ac.uk
>
> > +44 1491 69 2705
>
> >
>
>
>
> --
>
> Tim Booth <tbooth at ceh.ac.uk>
>
> NERC Environmental Bioinformatics Centre
>
>
>
> Centre for Ecology and Hydrology
>
> Maclean Bldg, Benson Lane
>
> Crowmarsh Gifford
>
> Wallingford, England
>
> OX10 8BB
>
>
>
> http://nebc.nerc.ac.uk
>
> +44 1491 69 2705
>
>
>
>
>
> Stephen P. Molnar, Ph.D. Life is a
> fuzzy set
>
> (614)312-7528 (c)
> Stochastic and
> multivariate
>
> Skype: smolnar1
>
>
>
> _______________________________________________
> Bio-Linux mailing list
> Bio-Linux at nebclists.nerc.ac.uk
> http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux
>
>
--
*********************************************
Md Tauqeer Alam, Ph.D
Division of Infectious Diseases
Emory University School of Medicine
615 Michael Street, Atlanta, GA 30322, USA
tauqeer9 at gmail.com
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