[Bio-Linux] Bowtie 2 and Galaxy

[Tim Booth]

Yes, that explains it.  I've pushed the new package onto Launchpad and
the update should appear in the update manager for you within the next
hour or so.

https://launchpad.net/~nebc/+archive/bio-linux/+build/4559662

Cheers,

TIM

On Wed, 2013-05-08 at 09:56 +0100, Mallon, Eamonn B. (Dr.) wrote:
> I found this on the top hat webpage
> 
> 
>           TopHat 2.0.8 release 2/26/2013
>           Note (4/12/2013): patched version 2.0.8b was released in order to
> provide compatibility with Bowtie v1.0.0
>            Version 2.0.8 is a quick fix release addressing the following issues:
> 
> 
> *  This version correctly handles the newest version of Bowtie2 v2.1.0.
> 
> 
> *  The segment mapping slow-down introduced by some Bowtie2 parameter
> changes in version 2.0.7 is now corrected.
>