[Bio-Linux] RStudio with Bio-Linux

[Tom Keller]

Hi Tim,
Is there a way to use RStudio with R from Bio-Linux?

thanks for your help.
Tom Keller
Thomas J. Keller, Ph.D.; Director, DNA Services Core Facility ; Oregon Health & Science University;
mailcode L220; 3181 SW Sam Jackson Park Rd; Portland, OR 97239; 503-494-2442

On Jul 23, 2013, at 4:00 AM, bio-linux-request at nebclists.nerc.ac.uk wrote:

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>   1. Bio-Linux updated image and new packages (Tim Booth)
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> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Mon, 22 Jul 2013 16:55:06 +0100
> From: Tim Booth <tbooth at ceh.ac.uk>
> Subject: [Bio-Linux] Bio-Linux updated image and new packages
> To: Bio-Linux mailing list <bio-linux at nebclists.nerc.ac.uk>
> Message-ID: <1374508506.10050.57.camel at balisaur>
> Content-Type: text/plain; charset="UTF-8"
> 
> Hi All,
> 
> I've put a new Bio-Linux image update on the website today (7.0.7).
> Existing users won't need to use this but I've added some new packages
> which you might be interested in installing on your machines (sudo
> apt-get install <packagename>):
> 
> abyss  (http://www.bcgsc.ca/platform/bioinfo/software/abyss)
> ray    (http://denovoassembler.sourceforge.net/)
> sickle (https://github.com/vsbuffalo/sickle)
> scythe (https://github.com/vsbuffalo/scythe)
> macs   (http://liulab.dfci.harvard.edu/MACS/)
> 
> The R environment has been upgraded to R3.0 and modules have been
> recompiled to work on the new R.  If you have installed extra modules
> and get an error about an incompatible R module you may need to run
> "install.packages(<modulename>)" within R.
> 
> The new image has updated drivers from Ubuntu the 12.04.2 release and so
> should work on some more modern computers.  I've not been able to test
> UEFI booting so if you have a UEFI machine you may need to set it back
> to BIOS boot for now.
> 
> The new STADEN Gap5 package and Taverna did not make this image release
> but will be coming soon.
> 
> Cheers,
> 
> TIM
> 
> -- 
> Tim Booth <tbooth at ceh.ac.uk>
> NERC Environmental Bioinformatics Centre 
> 
> Centre for Ecology and Hydrology
> Maclean Bldg, Benson Lane
> Crowmarsh Gifford
> Wallingford, England
> OX10 8BB 
> 
> http://nebc.nerc.ac.uk
> +44 1491 69 2705
> 
> 
> 
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> End of Bio-Linux Digest, Vol 59, Issue 4
> ****************************************