[Bio-Linux] work around script for extract_seq module via pregap4

[Bela Tiwari]

Dear all, 

This message is for anyone who supports a machine with users that run the extract_seq module in Staden via pregap4.

In the latest release of Staden (1.7.0) , the extract_seq module does not work properly via pregap4. We have reported this to the main Staden developer.

In the meantime, for those who rely on extract_seq, we have put a script on the NEBC wiki that can be used in its stead. 


The script and instructions on how to use it can be found at:

http://darwin.nerc-oxford.ac.uk/pgp-wiki/index.php/General_Bioinformatics_Scripts#Script:Extract_cleaned_sequences_from_.exp_files 




cheers, 

Bela

*************************
Dr. Bela Tiwari
Lead Bioinformatician
NERC Environmental 
Bioinformatics Centre

CEH Oxford
Mansfield Road
Oxford, OX1 3SR
01865 281975

*************************



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