[Bio-Linux] New Bio-Linux packages

[Milo Thurston]

Dear All,
I've recently produced some new packages that may be of interest (thanks to Stewart for 
checking them over), as follows:

bio-linux-yamap:
A first-pass annotation tool for metagenomics. 
http://www.genomics.ceh.ac.uk/yamap/

bio-linux-msatfinder:
A perl script for finding microsatellites.
http://www.genomics.ceh.ac.uk/msatfinder/

bio-linux-trnascan;
An application to search for tRNA genes in genomic sequence.
http://www.genetics.wustl.edu/eddy/tRNAscan-SE/

bio-linux-tetra:
A graphical application for comparing tetranucleotide frequencies between sequences.
The Linux version is a bit older than the Mac version, unfortunately.
http://www.megx.net/tetra_new/html/download.html

bio-linux-ocount:
A command line oligonucleotide frequency calculator.
http://www.megx.net/tetra_new/html/download.html

Also, the following package produced by CCS at CEH Ox. is available.

bio-linux-big-blast:
Sanger's script for chopping up sequences, blasting the parts and re-assembling
them.


Milo.

--
Dr. Milo Thurston, CEH Oxford, Mansfield Road, Oxford, OX1 3SR.
'phone 01865 281975,  fax 01865 281696.
http://www.genomics.ceh.ac.uk/lab/